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decimal places", "1.30 Weighted tables", "2 Model tables with finalfit()", "2.01 Default", "2.02 Hide reference levels", "2.03 Model metrics", "2.04 Model metrics can be applied to all supported base models", "2.05 Reduced model", "2.06 Include all models", "2.06 Interactions", "2.07 Interactions: create interaction variable with two factors", "2.08 Dependent name", "2.09 Estimate name", "2.10 Digits / decimal places", "2.11 Confidence interval type", "2.12 Confidence interval level", "2.13 Confidence interval separation", "2.14 Robust standard errors / confidence intervals", "2.15 Remove p-value", "2.16 Mixed effects random-intercept model", "2.16b Mixed effects random-intercept model with univariable estimates including random effects", "2.17 Mixed effects random-slope model", "2.18 Mixed effects random-slope model directly from lme4", "2.19 Exclude all missing data in final model from univariable analyses", "2.20 Linear regression", "2.21 Mixed effects random-intercept linear regression", "2.22 Mixed effects random-slope linear regression", "2.23 Cox proportional hazards model (survival / time to event)", "2.24 Cox proportional hazards model: change dependent label", "3 Model tables manually using ff_merge()", "3.1 Basic table", "3.2 Complex table (all in single pipe)", "3.3 Other GLM models", "Poisson", "Gamma", "3.4 Weighted regression", "3.5 Using base R functions", "3.6 Edit table rows", "3.7 Base model + individual explanatory variables", "4 Support for complex survey structures via library(survey)", "4.1 Linear regression", "4.2 Binomial example" ], "created": "2019-02-25 15:43:17", "modified": "2024-07-23 20:01:20", "commits": 19 }, { "source": "bootstrap.Rmd", "filename": "bootstrap.html", "title": "Bootstrap simulation for model prediction", "author": "Ewen Harrison", "engine": "knitr::rmarkdown", "headings": [ "Create new dataframe of explanatory variable levels", "ff_expand() for creating new data frame", "Run bootstrap simulations of model predictions", "Output to Word, PDF, and html via RMarkdown", "Make comparisons", "What is not included?", "Plotting" ], "created": "2018-09-11 10:28:18", "modified": "2024-07-23 20:01:20", "commits": 7 }, { "source": "export.Rmd", "filename": "export.html", "title": "Exporting tables and plots", "author": "Ewen Harrison", "engine": "knitr::rmarkdown", "headings": [ "Explore data", "Demographics table", "Logistic regression table", "Odds ratio plot", "MS Word via knitr/R Markdown", "Create Word template file", "PDF via knitr/R Markdown" ], "created": "2018-09-11 10:28:18", "modified": "2019-04-24 12:34:07", "commits": 5 }, { "source": "finalfit.Rmd", "filename": "finalfit.html", "title": "Getting started", "author": "Ewen Harrison", "engine": "knitr::rmarkdown", "headings": [ "Installation and Documentation", "Main Features", "1. Summarise variables/factors by a categorical variable", "2. Summarise regression model results in final table format", "Logistic regression: glm()", "Logistic regression with reduced model: glm()", "Mixed effects logistic regression: lme4::glmer()", "Cox proportional hazards: survival::coxph()", "Add common model metrics to output", "Combine multiple models into single table", "Bayesian logistic regression: with stan", "3. Summarise regression model results in plot", "OR plot", "HR plot", "Kaplan-Meier survival plots", "Notes" ], "created": "2018-09-10 13:19:05", "modified": "2021-06-18 13:50:47", "commits": 7 }, { "source": "missing.Rmd", "filename": "missing.html", "title": "Missing data", "author": "Ewen Harrison", "engine": "knitr::rmarkdown", "headings": [ "Some confusing terminology", "Missing completely at random (MCAR)", "Missing at random (MAR)", "Missing not at random (MNAR)", "1. Ensure your data are coded correctly: ff_glimpse", "Example scenario", "2. Identify missing values in each variable: missing_plot", "3. Look for patterns of missingness: missing_pattern", "Make sure you include missing data in demographics tables", "4. Check for associations between missing and observed data: missing_pairs | missing_compare", "For those who like an omnibus test", "5. Decide how to handle missing data", "MCAR, MAR, or MNAR", "MCAR vs MAR", "Common solution", "Other considerations", "MNAR vs MAR", "Where to next" ], "created": "2018-09-11 10:28:18", "modified": "2023-11-06 16:40:04", "commits": 9 }, { "source": "data_prep.Rmd", "filename": "data_prep.html", "title": "Preparing data for finalfit", "author": "Ewen Harrison", "engine": "knitr::rmarkdown", "headings": [ "Read data", "Column types", "Continuous data", "Categorical data", "Dates and times", "Check data", "Specify factors" ], "created": "2019-02-15 20:20:47", "modified": "2019-02-15 22:56:51", "commits": 2 }, { "source": "survival.Rmd", "filename": "survival.html", "title": "Time-to-event (Survival)", "author": "Ewen Harrison", "engine": "knitr::rmarkdown", "headings": [ "Background", "Installation", "Dataset", "Get data and check", "Death status", "Time and censoring", "Recode", "Kaplan-Meier survival estimator", "KM analysis for whole cohort", "Model", "Life table", "Kaplan Meier plot", "Cox-proportional hazards regression", "Univariable and multivariable models", "Reduced model", "Testing for proportional hazards", "Stratified models", "Correlated groups of observations", "Hazard ratio plot", "Competing risks regression", "Summary" ], "created": "2019-07-16 20:25:54", "modified": "2020-01-29 19:55:24", "commits": 3 } ], "_score": 11.950314844298434, "_indexed": true, "_nocasepkg": "finalfit", "_universes": [ "ewenharrison" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.1.1", "date": "2026-05-25T08:09:43.000Z", "distro": "noble", "commit": "8c6e16214d71b8a318f1c32e787139f35b7604e4", "fileid": "b6f3762c5bb02d645ec55cf854a371cd1154824d2d98e2238be179c6f60cafa5", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/ewenharrison/actions/runs/26390094230" }, { "r": "4.6.0", "os": "linux", "version": "1.1.1", "date": "2026-05-25T08:09:52.000Z", "distro": "noble", "commit": "8c6e16214d71b8a318f1c32e787139f35b7604e4", "fileid": "2b5399edb3996bd74a77b370cf25983a7ef01a3e0a634395fe63904b13fd64a8", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/ewenharrison/actions/runs/26390094230" }, { "r": "4.5.3", "os": "mac", "version": "1.1.1", "date": "2026-05-25T08:09:22.000Z", "commit": "8c6e16214d71b8a318f1c32e787139f35b7604e4", "fileid": "5514da2dd7e2a8fe32baa1ca10ff3fa53acf9b3790ba8184ab3295ece141b9d0", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/ewenharrison/actions/runs/26390094230" }, { "r": "4.6.0", "os": "mac", "version": "1.1.1", "date": "2026-05-25T08:08:53.000Z", "commit": "8c6e16214d71b8a318f1c32e787139f35b7604e4", "fileid": "5d81af9bb6975aaefc23562d7c76c6fb2da48fc11c8e114d61dcde2e823b4ea8", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/ewenharrison/actions/runs/26390094230" }, { "r": "4.6.0", "os": "wasm", "version": "1.1.1", "date": "2026-05-25T08:09:54.000Z", "commit": "8c6e16214d71b8a318f1c32e787139f35b7604e4", "fileid": "eea241dbd13d103387e0b1743010f6b81567cfd11ea69bd76b4e40b75c4f89e1", "status": "success", "buildurl": "https://github.com/r-universe/ewenharrison/actions/runs/26390094230" }, { "r": "4.7.0", "os": "win", "version": "1.1.1", "date": "2026-05-25T08:08:36.000Z", "commit": "8c6e16214d71b8a318f1c32e787139f35b7604e4", "fileid": "269fca5e5a674a1f443051eb1d4b29c65070330431ba1b84295a198bba3e9d98", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/ewenharrison/actions/runs/26390094230" }, { "r": "4.5.3", "os": "win", "version": "1.1.1", "date": "2026-05-25T08:08:22.000Z", "commit": "8c6e16214d71b8a318f1c32e787139f35b7604e4", "fileid": "30c60554c87f289ca0bfc709d949d121ec4f6caa13aa165f054e22a838b4212e", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/ewenharrison/actions/runs/26390094230" }, { "r": "4.6.0", "os": "win", "version": "1.1.1", "date": "2026-05-25T08:08:35.000Z", "commit": "8c6e16214d71b8a318f1c32e787139f35b7604e4", "fileid": "b15f2bf98f3b8afdda47a524e7fe9eebcb016247b121c0582be74ddcd1ee55e8", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/ewenharrison/actions/runs/26390094230" } ] }